Plant-rnaseq-pipeline
Overview
Plant-rnaseq-pipeline is a reusable bulk RNA-seq analysis workflow for plant transcriptome studies, covering major steps from raw read quality control to differential expression analysis.
Purpose
It was developed to provide a practical and reusable RNA-seq workflow for plant research, integrating standard processing steps such as quality control, read trimming, alignment, read counting, and downstream differential expression analysis.
Key features
- Reusable bulk RNA-seq workflow
- Includes QC, trimming, alignment, read counting, and DESeq2 analysis
- Designed for practical plant transcriptome analysis
- Simple script-based workflow for reproducible analysis
GitHub
Current status
Available as an active workflow repository for practical plant RNA-seq analysis and reusable transcriptome data processing.