OrganelleCleaner
Overview
OrganelleCleaner is a bioinformatics tool designed to identify and remove organelle-derived contigs from genome assemblies.
Purpose
It was developed to improve nuclear genome assemblies by filtering plastid- and mitochondria-derived contigs using graph structure and sequence-based evidence.
Key features
- Graph- and sequence-based detection
- Designed for genome assembly cleanup
- Supports practical preprocessing for downstream assembly analysis
GitHub
Current status
Available as an active software project for practical genome assembly preprocessing and cleanup workflows.